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Publications

  1. Shan-Ju Yeh, Shreya Paithankar, Ruoqiao Chen, Jing Xing, Mengying Sun, Ke Liu, Jiayu Zhou, Bin Chen, “TransCell: In silico characterization of genomics landscape and cellular responses by deep transfer learning,” Genom. Proteomics Bioinformatics, 2023 (Accept).

  2. Shan-Ju Yeh, Yun-Chen Chung, Bor-Sen Chen, “Investigating the role of obesity in prostate cancer and identifying biomarkers for drug discovery: systems biology and deep learning approaches,” Molecules, vol. 27, no. 3, pp. 900, 2022.

  3. Shan-Ju Yeh, Ming-Hsun Chung, Bor-Sen Chen, “Investigating pathogenetic mechanisms of alzheimer’s disease by systems biology approaches for drug discovery,” Int. J. Mol. Sci., vol. 22, no. 20, pp. 11280, 2021.

  4. Shan-Ju Yeh, Bor-Sen Chen, “Systems Medicine Design based on Systems Biology Approaches and Deep Neural Network for Gastric Cancer,” IEEE-ACM Trans. Comput. Biol. Bioinform., 2021.

  5. Shan-Ju Yeh, Jin-Fu Lin, Bor-Sen Chen, “Multiple-Molecule Drug Design Based on Systems Biology Approaches and Deep Neural Network to Mitigate Human Skin Aging,” Molecules, vol. 26, no. 11, pp. 3178, 2021.

  6. Shan-Ju Yeh, Bo-Jie Hsu, Bor-Sen Chen, “Systems Medicine Design for Triple-Negative Breast Cancer and Non-Triple-Negative Breast Cancer Based on Systems Identification and Carcinogenic Mechanisms,” Int. J. Mol. Sci., vol. 22, no. 6, pp. 3083, 2021.

  7. Shan-Ju Yeh, Shuo-Wei Chen, Bor-Sen Chen, “Investigation of the genome-wide genetic and epigenetic networks for drug discovery based on systems biology approaches in colorectal cancer,” Front. Genet., vol. 11, pp. 117, 2020.

  8. Shan-Ju Yeh, Chien-An Chang, Cheng-Wei Li, Lily Hui-Ching Wang, Bor-Sen Chen, “Comparing progression molecular mechanisms between lung adenocarcinoma and lung squamous cell carcinoma based on genetic and epigenetic networks: big data mining and genome-wide systems identification,” Oncotarget, vol. 10, no. 38, pp. 3760, 2019.

  9. Shan-Ju Yeh, Chien-Yu Lin, Cheng-Wei Li, Bor-Sen Chen, “Systems Biology Approaches to Investigate Genetic and Epigenetic Molecular Progression Mechanisms for Identifying Gene Expression Signatures in Papillary Thyroid Cancer,” Int. J. Mol. Sci., vol. 20, no. 10, pp. 2536, 2019.

  10. Shan-Ju Yeh, Chun-Chieh Yeh, Chung-Yu Lan, Bor-Sen Chen, “Investigating common pathogenic mechanisms between homo sapiens and different strains of Candida albicans for drug design: Systems biology approach via two-sided NGS data identification,” Toxins, vol. 11, no. 2, pp. 119, 2019.

  11. Shang-Wen Wong, Shan-Ju Yeh, Cheng-Wei Li, Lily Hui-Ching Wang, Bor-Sen Chen, “Investigation mechanisms between normal, developing and regenerating livers for regenerative liver drug design,” Regen. Med., vol. 14, no. 5, pp. 353-359, 2019.

  12. Wen-June Wang, Van-Phong Vu, Wei Chang, Chung-Hsun Sun, Shan-Ju Yeh, “A synthesis of observer-based controller for stabilizing uncertain T-S fuzzy systems,” J. Intell. Fuzzy Syst., vol. 30, no. 6, pp. 3451-3463, 2016.

  13. Shan-Ju Yeh, Wei Chang, Wen-June Wang, “Unknown input based observer synthesis for uncertain Takagi-Sugeno fuzzy systems,” IET Contr. Theory Appl., vol. 9, no. 5, pp. 729-735, 2015.

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Conference/Poster

  1.  Shan-Ju Yeh, Ruoqiao Chen, Jing Xing, Mengying Sun, Ke Liu, Shreya Paithankar, Jiayu Zhou, Bin Chen. Transcell: In silico characterization of genomic landscape and cellular responses from gene expressions through a two-step transfer learning [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2022; 2022 Apr 8-13. Philadelphia (PA): AACR; Cancer Res 2022;82(12_Suppl):Abstract nr 1927.

  2. Ching-Tse Ting, Shan-Ju Yeh, Bor-Sen Chen, “COVID-19-related versus non-viral acute respiratory distress syndrome: comparison of upper airway molecular pathway and drug discovery design based on systems biology and deep learning methods,” Conf. Int. automat. contr., Chiayi, Taiwan, Nov., 2021, pp. 1-7.

  3. Wei Chang, Shan-Ju Yeh, Wen-June Wang, Ya-Ju Chang, “Fuzzy control design for nonlinear interconnected systems by transforming the interconnection into a weighting linear term,” Conf. Syst. Sci. Eng., Budapest, Hungary, Jul., 2013, pp. 51-56.

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